ARC Centre of Excellence for Plant Energy Biology

Pre-release edition

ChloroP annotates chloroplast localisation by predicting the presence of a putative cTP sequence. ChloroP generates localisation scores in the range [0.410, 0.601], with scores [0.500, 0.601] representing affirmative predictions that are stored in Rice DB.

Citations:

Emanuelsson O, Nielsen H, von Heijne G. ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Science, 8:978-984, 2006.

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Example

Example: show ChloroP for LOC_Os02g07760.1

System Information

Transcript of last update

Took 44 seconds, 617 millis starting Thu, 26 Jul 2012 03:59:02 GMT:
Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/ChloroPPredictor_
Using db.local/downloaded/ChloroPPredictor_
Using chlorop.csv Wed May 09 08:51:18 WST 2012
SQL data loaded
Location statistics summarised
Full-text index and stems updated