InterPro is an integrated database of predictive protein signatures used for the classification and automatic annotation of proteins and genomes. InterPro classifies sequences at superfamily, family and subfamily levels, predicting the occurrence of functional domains, repeats and important sites.
In addition to InterPro's protein signature database, InterProScan integrates automated classification systems. In particular methods involving hidden Markov models (HMMs) via HMMER are included in Rice DB's InterPro import, for example Pfam. See ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/README.html
|Usage When Searching Rice DB||Usage Viewing Rice DB Results|
Example: show InterPro for LOC_Os01g01030.1
Transcript of last update
Took 47 seconds, 362 millis starting Sat, 23 Jun 2012 15:00:26 GMT: Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/InterPro_ Using db.local/downloaded/InterPro_ Using all.interpro Mon Oct 31 00:00:00 WST 2011 Loading InterPro descriptions from MSU Updating IDMAP Calculating stats Making full text index