ARC Centre of Excellence for Plant Energy Biology

Pre-release edition

Rice DB includes MapMan BinTree vocabulary (e.g. lightreaction, photosystem II, LCH-II) for searching. MapMan's version 1.1 bin code mapping for MSU v7 is used. For uncoded loci, putative rice annotations, if present, are indexed instead. Due to licensing restrictions the MapMan text cannot be shown publicly in Rice DB results.

Usage in Rice DB Search Usage in Rice DB Results
  • MapMan bin code names are searched by full text search in Rice DB.
  • Not available.
Intellectual Property
The display of MapMan bincodes and descriptions is currently embargoed. However, searches function normally.
Example: show MapMan for LOC_Os02g07760.1
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System Information

Transcript of last update

Took 24 seconds, 791 millis starting Wed, 29 Aug 2012 08:33:53 GMT:
Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/MapMan_
Using db.local/downloaded/MapMan_
Using Osa_MSU_v7.txt-1.1-MapMan Thu Aug 23 16:40:24 WST 2012
Loading MapMan annotations from FTP
Calculating stats
Making full text index