MitoProt 2 annotates mitochondrial localisation by predicting the presence of a putative mTP sequence. MitoProt returns a targeting likelihood for almost all loci; therefore Rice DB applies a cut-off of 50% before annotating a locus as mitochondrially-targeted, because this is the strategy used by SUBA
M.G. Claros, P. Vincens. Computational method to predict mitochondrially imported proteins and their targeting sequences. Eur. J. Biochem. 241:779-786, 1996.
Example: show MitoProt for LOC_Os02g07760.1
Transcript of last update
Took 8 seconds, 595 millis starting Wed, 1 Aug 2012 06:54:18 GMT: Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/MitoProtPredictor_ Using db.local/downloaded/MitoProtPredictor_ Using mitoprot.csv Wed Aug 01 12:47:19 WST 2012 SQL data loaded Location statistics summarised Full-text index and stems updated