ARC Centre of Excellence for Plant Energy Biology

Pre-release edition

Rice DB imports matched Pfam protein families from MSU. From the Wellcome Trust Sanger Institute website:

The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs).
Usage When Searching Rice DB Usage Viewing Rice DB Results
  • Search for Pfam accession IDs matched to Rice loci.
  • Search for Pfam names.
  • Pfam IDs and domain names can be shown as annotations.
Example: PF00069
Example: show Pfam for LOC_Os01g01110.1

System Information

Transcript of last update

Took 34 seconds, 866 millis starting Sat, 23 Jun 2012 15:22:51 GMT:
Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/Pfam_
Using db.local/downloaded/Pfam_
Using all.interpro Mon Oct 31 00:00:00 WST 2011
Updating IDMAP
Calculating stats
Making full text index