ARC Centre of Excellence for Plant Energy Biology

Pre-release edition

Predotar 1.03 estimates the probability that an amino acid sequence contains a mitochondrial, plastid or ER targeting sequence. It nominates one predicted location, or none, for each sequence. Rice DB shows the nominated prediction and its corresponding probability as a percentage. See Interpreting the results. Example:

Rice Peptide for PredotarMitochondrial ResultPlastid ResultER ResultElsewhere ResultPredotar PredictionRice DB LocationRice DB Score (%)
LOC_Os01g25150.10.390.330.030.40possibly mitochondrialpossibly mitochondrial39

Citations:

Small I, Peeters N, Legeai F, Lurin C. (2004) Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics, 4(6): 1581-90.

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Example

Example: show Predotar for LOC_Os02g07760.1

System Information

Transcript of last update

Took 11 seconds, 882 millis starting Sun, 19 Aug 2012 07:37:56 GMT:
Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/PredotarPredictor_
Using db.local/downloaded/PredotarPredictor_
Using predotar.csv Sat Aug 18 22:17:42 WST 2012
SQL data loaded
Location statistics summarised
Full-text index and stems updated