ARC Centre of Excellence for Plant Energy Biology

Pre-release edition

Protein Prowler annotates localisation for secretory pathway (presence of a signal peptide SP), mitochondrion (presence of a mitochondrial targeting peptide mTP) or chloroplast (presence of a chloroplast transit peptide cTP).

Citations:

Boden, M. and Hawkins, J. Prediction of subcellular localisation using sequence-biased recurrent networks. Bioinformatics. 21(10), pp. 2279-2286, 2005.

Hawkins, J. and Boden, M. Detecting and Sorting Targeting Peptides with Recurrent Networks and Support Vector Machines. Journal of Bioinformatics and Computational Biology. 4(1), pp. 1-18, 2006.

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Example

Example: show PProwler for LOC_Os02g07760.1

System Information

Transcript of last update

Took 24 seconds, 915 millis starting Wed, 1 Aug 2012 07:16:56 GMT:
Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/ProteinProwlerPredictor_
Using db.local/downloaded/ProteinProwlerPredictor_
Using pprowler.csv Thu Jul 26 16:39:01 WST 2012
SQL data loaded
Location statistics summarised
Full-text index and stems updated