ARC Centre of Excellence for Plant Energy Biology

Pre-release edition

Rice DB displays summary information from TAIR 10 for Arabidopsis thaliana orthologues (click in rice summary results). The locus orthology between Rice and Arabidopsis was download from Gramene and InParanoid.

Rice DB initially displays summary annotations from the first available TAIR short description, TAIR curated description, or TAIR computational description. Full TAIR descriptions are available by clicking the magnifier icon. AT AGIs in Rice DB are hyperlinked directly to the detailed pages in TAIR itself.

Usage When Searching Rice DB Usage Viewing Rice DB Results
  • N/A
  • Orthology data from TAIR (AGI-style At locus IDs, descriptions, peptide sequences) can be shown from rice summary records.

Transcript of last update

Took 12 minutes, 31 seconds, 232 millis starting Thu, 9 Aug 2012 00:06:16 GMT:
Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/TAIR_
Using db.local/downloaded/TAIR_
TAIR descriptions loaded
TAIR upstream 1kb loaded
TAIR DNA loaded
TAIR CDS loaded
TAIR peptides loaded