ARC Centre of Excellence for Plant Energy Biology

Pre-release edition

Rice DB imports coding DNA sequences from Michigan State University’s Rice Genome Annotation Project (MSU RGAP http://rice.plantbiology.msu.edu/) including versions 5.0, 6.0, 6.1 and 7.0. The sequence comes from the International Rice Genome Sequencing Project (IRGSP http://rgp.dna.affrc.go.jp/IRGSP/), Oryza sativa ssp. japonica cultivar Nipponbare.

Usage When Searching Rice DB Usage Viewing Rice DB Results
  • N/A.
  • Flat file info pages show coding DNA sequences (CDS) from MSU.
Example: find coding DNA for LOC_Os07g18120.1
Example: find CDS for LOC_Os07g18120.1

System Information

Transcript of last update

Took 1 minute, 55 seconds, 769 millis starting Wed, 5 Sep 2012 03:23:36 GMT:
Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/TIGRCDS_
Using db.local/downloaded/TIGRCDS_
Importing all.5.cds.gz
Importing all.6.cds.gz
Importing all.7.cds