ARC Centre of Excellence for Plant Energy Biology

Pre-release edition

Rice DB imports model protein sequences from Michigan State University’s Rice Genome Annotation Project (MSU RGAP including versions 5.0, 6.0, 6.1 and 7.0. The DNA sequence comes from the International Rice Genome Sequencing Project (IRGSP, Oryza sativa ssp. japonica cultivar Nipponbare.

Usage When Searching Rice DB Usage Viewing Rice DB Results
  • N/A.
  • Flat file info pages show model protein sequences from MSU.
Example: find peptide sequence for LOC_Os07g18120.1
There are 20 sequences with X's.

The Code

A  alanine               P  proline
B  aspartate/asparagine  Q  glutamine
C  cystine               R  arginine
D  aspartate             S  serine
E  glutamate             T  threonine
F  phenylalanine         U  selenocysteine
G  glycine               V  valine
H  histidine             W  tryptophan
I  isoleucine            Y  tyrosine
K  lysine                Z  glutamate/glutamine
L  leucine               X  any
M  methionine            *  translation stop
N  asparagine            -  gap of indeterminate length

System Information

Transcript of last update

Took 3 minutes, 21 seconds, 659 millis starting Thu, 19 Apr 2012 14:00:15 GMT:
Using /var/folders/75/983jwhw537q11ck7b_b0zwf80000gn/T/RiceDB/TIGRPEP_
Using db.local/downloaded/TIGRPEP_
Importing all.5.pep
Importing all.6.pep
Importing all.7.pep